I’m not sure what you are referencing about the “flag for cps”?

If it’s not faulted out, I’d just check the logs from time to time at this point. There really shouldn’t be any MCSS faults logged normally. OCSS might get some DTC’s from people holding the doors etc. but for the most part the Gen2 shouldn’t be logging faults.

I wouldn’t be looking at the encoder at this time as you’re not seeing any faults related to it.